PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG143300.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 191aa    MW: 22500.2 Da    PI: 9.3817
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG143300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR167.92.6e-21696189
                 FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89
                         +fYn YA + GFs r ++ k++  ++e+t+r+fv s eg+r+e++ + t+++r++ra tr+gC+a++ v++++ +g w+vt+++  H+H++
  Pavir.1NG143300.1.p  6 EFYNGYAFHKGFSGREDRVKYKPSTKEVTWRRFVYSFEGYRSEKHFErTDQKRQPRALTRCGCNARFDVQRSEsSGIWYVTDFVDVHSHPF 96
                         6******************************************998768999*******************999***************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.7E-19696IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MEDFFEFYNG YAFHKGFSGR EDRVKYKPST KEVTWRRFVY SFEGYRSEKH FERTDQKRQP  60
RALTRCGCNA RFDVQRSESS GIWYVTDFVD VHSHPFDKPE HAFVLRSHRG LNPYRSLEGG  120
GSRAGAWWAS SVPDHGCDGD QPRWSRRDWI SFAGSVKKIS RQKKVKIQGN DVEFMMNHMC  180
QMQEKDLEFF *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012700767.12e-61PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLK3YNE32e-62K3YNE3_SETIT; Uncharacterized protein
STRINGSi015784m6e-62(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2449976
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-14FAR1-related sequence 5